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Resources software - Production Environment

Name Version Description Topic Availability Target user
Anaconda 2019.10 (MARCONI) 2019.07 (GALILEO) 2020.02 (M100)

Python distribution for scientific computing

Production Environment GALILEO, MARCONI, MARCONI100 all
Bazaar 2.7.0

Bazaar is a version control system that helps you track project history over time and to collaborate easily with others

Production Environment MARCONI all
boost 1.66.0--intelmpi--2018--binary (MARCONI) 1.61.0--intelmpi--2018--binary (GALILEO)

Boost provides free peer-reviewed portable C++ source libraries.

Production Environment GALILEO, MARCONI all
CMake 3.12.0, 3.17.1 (M100)

CMake build system

Production Environment GALILEO, MARCONI, MARCONI100 all
CubeGUI 4.4

CubeGUI is a performance report explorer for Scalasca and Score-P

Production Environment GALILEO, MARCONI all
CUDA 10.0 (GALILEO) 10.1 (M100)

CUDA Toolkit

Production Environment GALILEO, MARCONI, MARCONI100 all
Cython 0.27.3

Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex)

Production Environment MARCONI all
ecCodes 2.13.0 (MARCONI) 2.12.0 (GALILEO)

ecCodes is a package developed by ECMWF which provides an application programming interface and a set of tools for decoding and encoding messages.

Production Environment GALILEO, MARCONI all
ELPA 2017.11.001--intelmpi--2018--binary

Eigenvalue SoLvers for Petaflop-Applications (ELPA)

Production Environment MARCONI all
Extrae 3.7.0 (MARCONI) 3.6.1 (GALILEO)

Instrumentation framework to generate execution traces of the most used parallel runtimes

Production Environment GALILEO, MARCONI all
FFmpeg 4.1.4

Collection of libraries and tools to process multimedia contents

Production Environment MARCONI all
Fluxbox 1.3.7

Fluxbox is a X11 lightweight windowmanager

Production Environment GALILEO all
Git 2.17.0, 2.27.0

 

Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.

 

Production Environment GALILEO, MARCONI, MARCONI100 all
GNU 8.3.0 (MARCONI) 7.3.0 (GALILEO) 9.3.0 (M100)

GNU Compiler Collection

Production Environment GALILEO, MARCONI, MARCONI100 all
hwloc 1.11.3--gnu--6.1.0

The hwloc software package provides a portable abstraction of the hierarchical topology of modern architectures

Production Environment MARCONI all
IDL 8.1 (MARCONI) 8.5 (GALILEO)

Interactive Data Language (development and visualization environment)

Astronomy, Physics, Production Environment, Visualisation GALILEO, MARCONI academic
Intel pe-xe-2018--binary

Intel compilers

Production Environment GALILEO, MARCONI all
Intelmpi 2018--binary

Intel MPI compilers

Production Environment GALILEO, MARCONI all
JDK 1.8.0_111

Development environment for building applications, applets, and components using the Java programming language.

Production Environment MARCONI all
JRE 1.8.0_111--binary

Java Runtime Enviroment

Production Environment GALILEO, MARCONI all
JUBE 2.1.1

Juelich Benchmarking Environment

Production Environment MARCONI all
MAGMA 2.5.0--cuda--9.0

A dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current "Multicore+GPU" systems.

Production Environment GALILEO all
mpi4py 3.0.0--python--3.6.4

MPI for Python

Production Environment GALILEO, MARCONI all
MVAPICH2 2.2--intel--pe-xe-2017--binary

BSD-licensed implementation of the MPI standard

Production Environment GALILEO, MARCONI all
NASM 2.07

Netwide Assembler

Production Environment GALILEO all
NcFTP 3.2.6

A set of FREE application programs implementing the File Transfer Protocol (FTP)

Production Environment GALILEO, MARCONI all
OpenMPI 3.1.4--gnu--7.3.0, 3.0.0--intel--pe-xe-2018--binary

OpenMPI

Production Environment GALILEO, MARCONI all
Paraver 4.7.2

Performance visualization and analysis tool

Production Environment GALILEO academic
PCManFM 1.2.3

PCMan lightweight File Manager

Production Environment GALILEO all
PGI 16.5 (MARCONI) 19.10 (GALILEO, M100)

PGI's full suite of parallelizing F77, F95, HPF, C and C++ compilers and development tools. Includes the OpenMP parallel debugger/profiler.

Production Environment GALILEO, MARCONI, MARCONI100 all
PnetCDF 1.11--intelmpi--2018--binary (MARCONI) 1.10.0--intelmpi--2018--binary (GALILEO)

A high-performance parallel I/O library for accessing Unidata's NetCDF

Production Environment GALILEO, MARCONI all
popt 1.16

Library for parsing arguments

Production Environment MARCONI all
Python 3.6.4 2.7.12 3.8.2 (M10)

Python programming language

Production Environment GALILEO, MARCONI, MARCONI100 all
Qt 5.7.0--intelmpi--2018--binary 5.9.0--gnu--6.1.0

Cross-platform application and GUI framework

Maths Libraries, Production Environment GALILEO, MARCONI all
RCM meta

Remote Connection Manager (TurboVNC wrapper)

Production Environment, Visualisation GALILEO, MARCONI all
ROOT 6.08.06

A modular scientific software framework

Production Environment MARCONI all
SAMtools 1.3.1 (MARCONI) 1.9 (GALILEO)

Generic format for storing large nucleotide sequence alignments

Production Environment GALILEO, MARCONI all
Scalasca 2.4

Profiler for parallel scientific and engineering applications

Production Environment GALILEO, MARCONI all
SCons 2.5.1

Open Source software construction tool, a next-generation build tool.

Production Environment MARCONI all
Score-P 4.0

A highly scalable tool suite for profiling, event tracing, and online analysis of HPC applications.

Production Environment GALILEO, MARCONI all
Selfie 1.0.3

Self and Light proFIling Engine - a very light profiling tools for Linux commands and HPC codes

Production Environment MARCONI all
Singularity 3.2.1, 3.5.3 (M100) 3.6.1 (marconi,galileo,M100)

Containarization tool for HPC

Production Environment GALILEO, MARCONI, MARCONI100 all
Spack 0.14.2

A flexible package manager supporting multiple versions, configurations, platforms and compilers. 

Production Environment MARCONI100 all
Spectrum MPI 10.3.1--binary

Accelerating High-performance application parallelization.

Production Environment MARCONI100 all
TotalView 2018.3

Debug and analyze serial, multiprocessor, and multithreaded programs

Production Environment GALILEO, MARCONI academic
TurboVNC svn

Remote control software which lets you see and interact with desktop applications across any network.

Production Environment GALILEO all
Valgrind 3.11.0

Valgrind is an instrumentation framework for building dynamic analysis tools

Production Environment MARCONI all
VTune 2018

Intel VTune Amplifier performance analysis toolkit

Production Environment GALILEO, MARCONI all
Xerces-C++ 3.2.2--intel--pe-xe-2018--binary

Xerces-C++ is a validating XML parser written in a portable subset of C++.

Production Environment MARCONI all
XL 16.1.1

IBM XL High performance compiler

Production Environment MARCONI100 all
Zstd 1.4.5

 

Zstandard is a fast compression algorithm, providing high compression ratios.

 

Production Environment GALILEO all