Selfie
Self and Light proFIling Engine – a very light profiling tools for Linux commands and HPC codes
JDK
Development environment for building applications, applets, and components using the Java programming language.
Cufflinks
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.
NetCDFF
Fortran interface of NetCDF, a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
Stata
Stata is a complete, integrated software package that provides data manipulation, visualization, statistics, and automated reporting.
Trilinos
The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems.