Varscan
VarScan is a platform-independent mutation caller for targeted, exome, and whole-genome resequencing data generated on Illumina, SOLiD, Life/PGM, Roche/454, and similar instruments.
Sra
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archive and download them locally
Opencv
OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library.
Cudnn
NVIDIA cuDNN is a GPU-accelerated library of primitives for deep neural networks
Wanniertools
WannierTools is a software for investigation of novel topological materials.
SciPy
SciPy (pronounced “Sigh Pie”) is open-source software for mathematics, science, and engineering.
Dakota
The Dakota project delivers both state-of-the-art research and robust, usable software for optimization and UQ.