Papi
Performance Application Programming InterfacePAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI […]
NucleoATAC
NucleoATAC is a python package for calling nucleosome positions and occupancy using ATAC-Seq data.
Macs
Next generation parallel sequencing technologies made chromatin immunoprecipitation followed by sequencing (ChIP-Seq)
Ericscript
EricScript is a computational framework for the discovery of gene fusions in paired end RNA-seq data.
BBMap
This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded.
Ataqv
Ataqv is a toolkit for measuring and comparing ATAC-seq resultsand to make it easier to spot differences that might be caused by library prep or sequencing.