Bwa
Bwakit is a self-consistent installation-free package of scripts and precompiled binaries, providing an end-to-end solution to read mapping.
HISAT2
Graph-based alignment of next generation sequencing reads to a population of genomes
GMP
GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating-point numbers. GMP has a rich set of functions, and the functions have a regular interface.
NcFTP
A set of FREE application programs implementing the File Transfer Protocol (FTP)
Git
Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.