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4.0(MARCONI) 4.2.0 (G100)

The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

Target user: 
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Help and documentation: 

You can find documentation on the system, with the command

module load profile/bioinf
module help gatk

The manual is on the web at the original home page (http://www.broadinstitute.org/gatk/index.php)

CINECA consultants can be reached through the address: superc@cineca.it