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Picard

Version: 
2.25.7 (G100), 2.7.1 (Marconi)

Picard comprises Java-based command-line utilities that manipulate SAM files (described in SAMtools page), and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported

Target user: 
all
Support level: 
low
Help and documentation: 

On Galileo you can load the module with the command:

module load profile/bioinf
module load autoload picardtools

on Marconi using the command

module load profile/bioinf
module load autoload picard

You can find the documentation on the web at the original site (http://broadinstitute.github.io/picard/)

Deadline: 
01/01/2023