Vcftools

Version:

0.1.16

A set of tools written in Perl and C++ for working with VCF files

Target user:

all

Official web site:

Support level:

medium

Related Commands:

'$ module load profile/bioinf

$ module load autoload vcftools

$ vcftools [ --vcf FILE | --gzvcf FILE | --bcf FILE] [ --out OUTPUT PREFIX ] [ FILTERING OPTIONS ] [ OUTPUT OPTIONS ]

Example

$ module load profile/bioinf

$ module load autoload vcftools

$ vcftools --gzvcf input_file.vcf.gz --freq --chr 1 --out chr1_analysis

To see a list of alla available tools, run

$ man vcftools

Or visit the Documentation page:

Help and documentation:

You can find documentation on the system, with the command 'module help vcftools

- The manual is on the web at the original home page (/cineca/prod/build/applications/vcftools/0.1.15/gnu--10.2.0--gcc--8.3.1/BA_WORK/)

CINECA consultants can be reached through the address: superc@cineca.it'''

Deadline:

31/12/2022

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