Beagle

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Systems

Leonardo
Galileo100
Marconi
Ada Cloud

Beagle is a software package that performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection.

Version: 4.1

Availability: MARCONI

Target: all

Official web site: faculty.washington.edu/browning/beagle/beagle.html

Related Commands:

Beagle is distributed as a .jar file. The current version (4.1)

requires Java 8.


To run beagle 4.1, load the jre module and the beagle module 

  $ module load jre

  $ module load beagle/4.1


and then run


  $ java -jar $BEAGLE_HOME/beagle-4.1.jar


Running the jar without parameters will print a list of all the

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