Freebayes

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Systems

Leonardo
Galileo100
Marconi
Ada Cloud

Freebayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.

Version: 1.3.4 (G100) 1.1.0 (MARCONI)

Availability: GALILEO100, MARCONI

Target: all

Official web site: https://github.com/ekg/freebayes

Related Commands:

To load the application you should run:

module load profile/bioinf
module load freebayes


Help and Documentation:

You can find documentation on the system, with the command :

module help freebayes

The manual is on the web at the original home page (https://github.com/freebayes/freebayes/releases)

 

CINECA consultants can be reached through the address: superc@cineca.it

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