Picard

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Systems

Leonardo
Galileo100
Marconi
Ada Cloud

Picard comprises Java-based command-line utilities that manipulate SAM files (described in SAMtools page), and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported

Version: 2.25.7 (G100), 2.7.1 (Marconi)

Availability: GALILEO100, MARCONI

Target: all

Official web site: http://broadinstitute.github.io/picard/

Related Commands:

java jvm-args -jar picard.jar PicardToolName OPTION1=value1 OPTION2=value2...

Help and Documentation:

Please load the module after searching it with

modmap -m picard
module load profile/bioinf
module load autoload picard

 

If you need the installation path you can find it with the comand after have loaded the module

module show picard 

 

You can find the documentation on the web at the original site (http://broadinstitute.github.io/picard/)

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