PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.The focus of PLINK is on the analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype, or CNV calls from raw data.Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results.

Version: 1.90

Availability: GALILEO100

Target: academic

Official web site:

Related Commands:

module load profile/bioinf

module load plink

module show plink

Help and Documentation:

You can find documentation on the system, with the command 'module help plink

- The manual is on the web at the original home page (


CINECA consultants can be reached through the address:'''

contact =