VMD is designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring a molecule: simple points and lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others. VMD can be used to animate and analyze the trajectory of a molecular dynamics (MD) simulation. In particular, VMD can act as a graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer.

Version: 1.9.3(Marconi) 1.9.4(M100, G100)

Availability: GALILEO100, MARCONI

Target: all

Official web site: https://www.ks.uiuc.edu/Research/vmd/

Related Commands:

Use this tool with RCM oCommand: "vglrun vmd".

Help and Documentation:

You can find documentation on the system, with the command 'module help vmd

- The manual is on the web at the original home page (https://www.ks.uiuc.edu/Research/vmd/)


CINECA consultants can be reached through the address: superc@cineca.it'''

contact = Alex Grottesi