Seqtk

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Systems

Leonardo
Galileo100
Marconi
Ada Cloud

This tool allows to manipulate sequences in FASTA and FASTQ format. It allows to switch between FASTA and FASTQ as well as to apply reverse complement transformation to the sequences or trim low quality.

Version: 1.2-r94 (Marconi)

Availability: MARCONI

Target: all

Official web site: https://github.com/lh3/seqtk

Related Commands:

 A detailed description of all the command is reported in the

documentation: https://github.com/lh3/seqtk


How to use

$ module load profile/bioinf

$ module load autoload seqtk

$ seqtk [flags] [arguments] > [output_file]


Example

$ module load profile/bioinf

$ module load autoload seqtk

$ seqtk seq -a in.fq.gz > out.fa

Help and Documentation:

 A detailed description of all the command is reported in the

documentation: https://github.com/lh3/seqtk

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