Ataqv
Ataqv is a toolkit for measuring and comparing ATAC-seq resultsand to make it easier to spot differences that might be caused by library prep or sequencing.
Annovar
A software tool to utilize update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others).
Wannier90
Wannier90 is an open-source code (released under GPLv2) for generating maximally-localized Wannier functions and using them to compute advanced electronic properties of materials with high efficiency and accuracy.
Slate
The Software for Linear Algebra Targeting Exascale (SLATE) provides fundamental dense linear algebra capabilities to the high-performance computing (HPC) community.
Samtools
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
Sambamba
Sambamba is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files.
Rsem
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data
Beagle
Beagle is a software package that performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection.